DNA Damage Atlas


GSM4126126-K562_treated_with_Etoposide_for_12_hours_bioreplica_2




Basic Information

Manual

Sample ID:   

SRR10298700


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

12hrs


Treatment Dose:   

100uM


In-situ Treatment:   

cells are crosslinked in situ with formaldehyde


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr126645117166451662664512988226.64/
chr157791066277910907779107836778.46/
chr23309156333092182330917876287.99/
chr61605214111605218431605216974254.93/
chr41709004170922817091151066.99/
chr32580238725802611258024981041.32/
chr17327823032785433278385768.845/
chr1200457020200457233200457125678.655/
chr6945401494542199454115504.815/
chr2270400922704051827040201483.927/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451171664514156645129816527.5/
chr157791066577910900779107836969.04/
chr23309159233092171330917876703.95/
chr61605215551605218431605216976382.39/
chr41709012170922417091151111.89/
chr32580240825802611258024981027.67/
chr17327827032785433278385881.497/
chr11689000496890032968900173657.061/
chr1200457027200457231200457125620.021/
chr5583583465835857158358455412.488/
Download the Full Merged Peak List



Motif Analysis

Manual





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