DNA Damage Atlas

GSM4126127-K562_treated_with_Etoposide_for_12_hours_without_formaldehyde_crosslinking

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10298701


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

12hrs


Treatment Dose:   

100uM


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr126645116966451662664512916681.54/
chr157791066577910906779107842344.78/
chr23309158333092021330917841811.36/
chr116890004768900337689001911277.56/
chr5583583455835861758358480682.425/
chr2215030029215030300215030163591.04/
chr7105244618105244903105244759559.38/
chr7415782674157854441578404507.985/
chr13923756389237593192375783495.572/
chr7113132002113132284113132142483.053/
Download the Full Peak List


Visualization

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Motif Analysis

Manual





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