DNA Damage Atlas

GSM4126128-K562_treated_with_Etoposide_for_24_hours_bioreplica_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10298702


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

24hrs


Treatment Dose:   

100uM


In-situ Treatment:   

cells are crosslinked in situ with formaldehyde


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451169664516666645131341044.9/
chr1577910662779111907791078214723.1/
chr23309156533092180330917878321.63/
chr61605215511605218991605217247611.44/
chr41709001170922617091123147.82/
chr32580238825802612258024991191.72/
chr71074102381074109221074105431102.48/
chr11689000476890033768900191979.389/
chr2238252201238252420238252309833.14/
chr7127457599127457889127457743805.826/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451172664514156645131383921.9/
chr1577910668779109077791078232522.5/
chr61605215561605218401605217249323.53/
chr23309157933092179330917878526.67/
chr41709015170922417091123307.09/
chr71074103851074108901074105431493.26/
chr116890005068900268689001911257.5/
chr32580238925802611258024991198.41/
chr71274576021274578021274577431042.62/
chr11437030334370325143703173907.052/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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