DNA Damage Atlas

GSM4126129-K562_treated_with_Etoposide_for_24_hours_bioreplica_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10298703


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

24hrs


Treatment Dose:   

100uM


In-situ Treatment:   

cells are crosslinked in situ with formaldehyde


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451172664514156645129211540.2/
chr23309157933092179330917894737.74/
chr157791066877910907779107864319.75/
chr116890005068900268689001581935.95/
chr61605215561605218401605216971596.58/
chr22150300302150303282150301781310.89/
chr119467602946784694677231257.93/
chr11437030334370325143703141959.974/
chr2102972480102972787102972632840.733/
chr1239871863239872105239871983821.532/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451172664514156645129211540.2/
chr23309157933092179330917894737.74/
chr157791066877910907779107864319.75/
chr116890005068900268689001581935.95/
chr22150300302150302502150301781759.81/
chr61605215561605218401605216971596.58/
chr11437030334370325143703141959.974/
chr2102972482102972761102972632912.606/
chr6217180212171826421718165904.272/
chr1239871863239872105239871983821.532/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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