DNA Damage Atlas

GSM4126130-K562_treated_with_Etoposide_for_24_hours_without_formaldehyde_crosslinking

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10298704


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

24hrs


Treatment Dose:   

100uM


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451171664516626645129216548.7/
chr23309158033092057330917904558.88/
chr157791066577910907779107853196.35/
chr116890004968900287689001671543.68/
chr55835834658358576583584601139.75/
chr13918405389184095191840810754.94/
chr7142560475142560776142560624679.569/
chr6160521555160521843160521698665.422/
chr2215030029215030314215030170567.905/
chr13923756339237593292375781454.969/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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