DNA Damage Atlas

GSM4126131-K562_treated_with_Etoposide_for_36_hours_bioreplica_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10298705


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

36hrs


Treatment Dose:   

100uM


In-situ Treatment:   

cells are crosslinked in situ with formaldehyde


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451171664514176645129312415.3/
chr1577910662779109067791078312166.3/
chr41709002170922617091131508.8/
chr61605215551605218401605216961357.84/
chr116890004968900404689002251269.37/
chr11437030354370326943703151981.636/
chr2330915803309217233091778787.144/
chr13918406769184113891840812460.774/
chr10772570317725723477257131450.454/
chr4105891208105891437105891321440.839/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451172664514136645129312669.9/
chr1577910662779109067791078312166.3/
chr116890005068900287689002251892.12/
chr41709021170922417091131473.89/
chr61605215551605218401605216961357.84/
chr11437030354370326943703151981.636/
chr3258023912580261225802499857.322/
chr2330915813309217233091778788.476/
chr1285766412857685428576664597.594/
chr4105891209105891414105891321478.176/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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