DNA Damage Atlas


GSM4126138-K562_treated_with_Etoposide_for_6_hours_bioreplica_2




Basic Information

Manual

Sample ID:   

SRR10298712


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

6hrs


Treatment Dose:   

100uM


In-situ Treatment:   

cells are crosslinked in situ with formaldehyde


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr126645116866451417664512918612.06/
chr157791066877910908779107872778.57/
chr23309158033092056330917821835.9/
chr6160521538160521841160521688388.385/
chr20552493855524963155249507345.494/
chr22234662162346643523466324298.53/
chr2215030029215030233215030130288.433/
chr1200457026200457232200457128285.633/
chr11689000446890032868900185276.246/
chr4170901517092241709118218.97/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr126645117166451413664512918825.15/
chr157791066877910905779107872804.55/
chr23309158033092056330917821835.9/
chr6160521549160521841160521688403.016/
chr20552493855524962955249507339.395/
chr22234662162346643523466324298.53/
chr2215030030215030233215030130289.854/
chr1200457026200457232200457128285.633/
chr11689000496890032868900185281.196/
chr4170901517092241709118218.97/
Download the Full Merged Peak List



Motif Analysis

Manual





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