DNA Damage Atlas


GSM4126142-K562_treated_with_Imatinib_for_24_hours_bioreplica_1




Basic Information

Manual

Sample ID:   

SRR10298716


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Imatinib


Treatment Time:   

24hrs


Treatment Dose:   

1uM


In-situ Treatment:   

cells are crosslinked in situ with formaldehyde


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr126645117066451666664512928218.72/
chr61605215531605218411605216964420.6/
chr157791066277910908779107843414.02/
chr139184064491840953918407972582.41/
chr116890004868900364689002052500.07/
chr23309157033092277330917872487.15/
chr119467569946784794677071340.38/
chr1239871843239872140239871990938.54/
chr2215029995215030312215030152915.774/
chr10772570317725724077257134839.618/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr126645117166451666664512928235.32/
chr61605215551605218411605216964451.52/
chr157791066277910908779107843414.02/
chr139184067191840939918407972964.01/
chr23309158033092179330917872930.76/
chr116890004868900347689002052639.8/
chr22150300292150302512150301521294.65/
chr12398718632398721402398719901006.3/
chr10772570317725724077257134839.618/
chr2102972482102972763102972569809.517/
Download the Full Merged Peak List



Motif Analysis

Manual





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