DNA Damage Atlas


GSM4126149-K562_treated_with_Imatinib_for_6_hours_bioreplica_2




Basic Information

Manual

Sample ID:   

SRR10298723


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Imatinib


Treatment Time:   

6hrs


Treatment Dose:   

1uM


In-situ Treatment:   

cells are crosslinked in situ with formaldehyde


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr116890005068900367689002072346.73/
chr126645117266451413664512911845.76/
chr23309158133092179330917861388.71/
chr139184067091840952918408101273.23/
chr11437030354370332743703180876.078/
chr2102972478102972759102972617778.004/
chr2215030010215030311215030159698.568/
chr1285766402857692328576780678.625/
chr6167372545167372854167372698665.743/
chr6217179972171826521718130623.137/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr116890005068900355689002072434.08/
chr126645117266451413664512911845.76/
chr23309158133092059330917861735.75/
chr2215030031215030242215030159982.145/
chr5583583475835856158358468971.924/
chr2102972482102972706102972617962.423/
chr1285766402857684528576780914.616/
chr11437030354370332743703180876.078/
chr4105891209105891487105891263821.897/
chr6167372547167372829167372698721.408/
Download the Full Merged Peak List



Motif Analysis

Manual





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