DNA Damage Atlas

GSM4126155-K562_treated_with_Romidespin_for_24_hours_without_formaldehyde_crosslinking

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR10298729


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Romidepsin


Treatment Time:   

24hrs


Treatment Dose:   

0.0462uM


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr126645117166451690664512926637.9/
chr23309158033092283330917822503.44/
chr15779106627791118677910780802.449/
chr11689000486890032568900185354.101/
chr6160521555160522079160521697328.344/
chr22196278281962806719627946245.568/
rDNA336233420133866212.819/
chr7107410391107410987107410543199.647/
chr1109335604109335820109335711186.107/
chr5583583455835859358358468184.786/
Download the Full Peak List


Visualization

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Motif Analysis

Manual





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