DNA Damage Atlas

GSM4126157-K562_treated_with_Romidespin_for_36_hours_bioreplica_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10298731


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Romidepsin


Treatment Time:   

36hrs


Treatment Dose:   

0.0462uM


In-situ Treatment:   

cells are crosslinked in situ with formaldehyde


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr23309157433092073330917904939.6/
chr126645117166451452664513103655.88/
chr6160521554160522057160521682261.614/
chr11688999326890034968900164175.021/
chr1285766422857684528576742136.184/
chr15779106657791118577910782127.594/
chr4825151828251540082515290101.451/
chr558358347583585535835844985.8886/
chr120045702120045723120045712584.2526/
chr118480280418480304518480292382.592/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr23309158133092073330917905009.88/
chr126645117166451410664513104270.58/
chr11689000506890026868900164329.716/
chr6160521554160522057160521682261.614/
chr15779106657791107077910782163.825/
chr1285766422857684528576742136.184/
chr1143702981437032394370313594.2943/
chr913363586913363606913363596893.9943/
chr210297238710297270010297261691.8569/
chr118480280418480304518480292382.592/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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