DNA Damage Atlas

GSM4126159-K562_treated_with_Romidespin_for_48_hours_bioreplica_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10298733


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Romidepsin


Treatment Time:   

48hrs


Treatment Dose:   

0.0462uM


In-situ Treatment:   

cells are crosslinked in situ with formaldehyde


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr116889954368900626689002061349.03/
chr13918406379184095491840794993.134/
chr2102972316102972774102972582905.003/
chr6167372377167372878167372703882.589/
chr11946755494678479467699866.606/
chr1285764452857696928576804676.287/
chr12664511726645140166451285673.571/
chr11437029564370330843703131656.182/
chr2121890112121890574121890278618.087/
chr1239871833239872140239871985587.463/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr116890004968900327689002065221.26/
chr21029724391029727041029725821543.22/
chr41058912091058914101058912961404.94/
chr61673725481673728781673727031339.93/
chr21218901121218903181218902781324.76/
chr119467629946784694676991137.31/
chr121227349012273691122736441125.52/
chr20489652294896543148965376967.23/
chr1273724132737289427372744874.885/
chr1285764452857685128576804853.36/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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