DNA Damage Atlas

GSM4126160-K562_treated_with_Romidespin_for_48_hours_bioreplica_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10298734


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Romidepsin


Treatment Time:   

48hrs


Treatment Dose:   

0.0462uM


In-situ Treatment:   

cells are crosslinked in situ with formaldehyde


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr116890004968900327689001871659.21/
chr9134144683134144887134144784828.235/
chr2330915813309198533091784690.059/
chr1273724132737289427372730537.44/
chr2102972439102972704102972570529.196/
chr2121890002121890318121890159454.481/
chr12664511726645141466451292425.891/
chr8118446392118446613118446501405.198/
chr12122734901227369112273589395.081/
chr1806552680657308065627364.424/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr116890004968900327689001871659.21/
chr9134144683134144887134144784828.235/
chr2121890112121890318121890159688.963/
chr2330915813309198133091784680.064/
chr1273724132737289427372730537.44/
chr2102972439102972704102972570529.196/
chr12664511726645140166451292427.934/
chr12122734901227369112273589395.081/
chr6442203504422059444220512380.852/
chr1806552680657308065627364.424/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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