DNA Damage Atlas

GSM4126162-K562_treated_with_Romidespin_for_6_hours_bioreplica_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10298736


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Romidepsin


Treatment Time:   

6hrs


Treatment Dose:   

0.0462uM


In-situ Treatment:   

cells are crosslinked in situ with formaldehyde


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr126645116966451678664512922166.66/
chr157791066877910905779107851671.21/
chr23309159133092050330917851206.15/
chr11689000496890032968900188709.907/
chr1200457019200457232200457124442.411/
chr2215030030215030253215030140442.38/
chr20552493845524963855249510411.577/
chr12506355535063578850635669375.932/
chr5583583465835855458358449361.021/
chr11437028614370330843703170319.514/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr126645117266451665664512922236.97/
chr157791066877910905779107851671.21/
chr23309159133092050330917851206.15/
chr11689000496890032968900188709.907/
chr11437030354370330843703170517.767/
chr1200457019200457232200457124442.411/
chr2215030030215030253215030140442.38/
chr6160521555160521844160521697422.869/
chr20552493845524963655249510409/
chr12506355535063578850635669375.932/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab