DNA Damage Atlas

GSM4126163-K562_treated_with_Romidespin_for_6_hours_bioreplica_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10298737


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Romidepsin


Treatment Time:   

6hrs


Treatment Dose:   

0.0462uM


In-situ Treatment:   

cells are crosslinked in situ with formaldehyde


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr23309158033092254330917894783.72/
chr61605215531605218441605216974138.99/
chr126645117266451665664512904038.18/
chr116890004668900354689001992203.54/
chr22704005627040306270401801216.21/
chr157791032777910907779107861160.79/
chr13918406769184095191840812957.569/
chr5583583445835857858358460951.325/
chr1239871856239872081239871967768.176/
chr11946757694678469467710757.451/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr23309159133092050330917896988.97/
chr61605215551605218441605216974167.64/
chr126645117266451665664512904038.18/
chr157791066877910905779107862814.03/
chr116890004968900329689001992420.66/
chr22704009727040306270401801450.47/
chr55835834658358554583584601061.54/
chr12004570192004572322004571261023.88/
chr21029724821029726881029726191010.35/
chr11437030354370330843703228971.214/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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