DNA Damage Atlas

GSM4126164-K562_treated_with_Romidespin_for_6_hours_without_formaldehyde_crosslinking

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR10298738


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Romidepsin


Treatment Time:   

6hrs


Treatment Dose:   

0.0462uM


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr126645117166451662664512929657.18/
chr23309158033092127330917872710.83/
chr116890004968900353689002002072.64/
chr139184064991840952918407991203.91/
chr5583583455835861558358479933.846/
chr7105244605105244905105244754900.118/
chr15779106627791121977910813842.972/
chr2215030000215030317215030157714.024/
chr11437030354370333243703182685.896/
chr7415781494157854341578345633.265/
Download the Full Peak List


Visualization

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Motif Analysis

Manual





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