DNA Damage Atlas


GSM4126180-K562_treated_with_Talazoparib_for_36_hours_bioreplica_2




Basic Information

Manual

Sample ID:   

SRR10298754


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Talazoparib


Treatment Time:   

36hrs


Treatment Dose:   

1uM


In-situ Treatment:   

cells are crosslinked in situ with formaldehyde


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr126645117066451681664512901290.64/
chr23309158133092179330917841220.31/
chr11688998876890029668900139517.109/
chr11437030354370326643703149384.401/
chr19479248174792505747924936295.989/
chr1203210505203210706203210604261.048/
chr2102972422102972717102972568257.223/
chr2215030030215030232215030130227.786/
chr6160521552160522005160521695203.147/
chr1285766412857684728576743195.933/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr126645117166451417664512902674.4/
chr23309158133092179330917841220.31/
chr11689000506890028268900139897.709/
chr15779106657791090677910785411.995/
chr11437030354370326643703149384.401/
chr6160521552160521840160521695316.73/
chr19479248174792505747924936295.989/
chr2102972422102972688102972568282.231/
chr2270400972704030627040200270.368/
chr1203210505203210705203210604250.245/
Download the Full Merged Peak List



Motif Analysis

Manual





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