DNA Damage Atlas

GSM4126185-K562_treated_with_YM-155_for_12_hours_bioreplica_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10298759


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

YM-155


Treatment Time:   

12hrs


Treatment Dose:   

1uM


In-situ Treatment:   

cells are crosslinked in situ with formaldehyde


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1577910665779109097791078611145.2/
chr126645117166451673664513167825.62/
chr23309125333092179330917863455.36/
chr61605212761605218431605216982030.19/
chr116890004968900370689002081733.63/
chr41709001170922617091121192.67/
chr22382522012382524222382523101151.22/
chr3258021082580261125802498902.283/
chr2270400962704030627040200890.309/
chr17579863875798661457986499820.404/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1577910665779109067791078611259.6/
chr126645117166451673664513167825.62/
chr23309157933092179330917865331.56/
chr61605215551605218401605216984033.86/
chr116890004968900279689002082397.23/
chr32580238925802611258024982021.24/
chr114370303443703238437031701538.27/
chr41709002170922617091121184.9/
chr119467626946784594677071017.77/
chr2215030031215030232215030148900.992/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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