DNA Damage Atlas

GSM4126190-K562_treated_with_YM-155_for_36_hours_bioreplica_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10298764


Source Project ID:   

GSE139011

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

YM-155


Treatment Time:   

36hrs


Treatment Dose:   

1uM


In-situ Treatment:   

cells are crosslinked in situ with formaldehyde


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr157791066277910905779107829038.68/
chr126645117066451673664512905706.49/
chr61605215541605218401605216961669.83/
chr2330915803309218033091789808.902/
chr3258023962580261125802502713.036/
chr4170881017092261709113483.996/
chr2238252201238252420238252309458.073/
chr11689000506890026068900154198.483/
chrX399696973996994239969818187.429/
chr2234095109234095388234095247154.46/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451170664514186645129011565.5/
chr157791066277910905779107829038.68/
chr61605215551605217951605216961986.93/
chr4170900117092241709113899.713/
chr2330915803309217933091789809.073/
chr3258023962580261125802502713.036/
chr2238252201238252420238252309458.073/
chr17579863865798659957986492208.954/
chr11689000506890026068900154198.483/
chr7107410398107410715107410551198.345/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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