DNA Damage Atlas

GSM4126204-HeLa_bioreplica_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10298778


Source Project ID:   

GSE139011

Cell Type:   

HeLa


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr116890004968900328689001871198.85/
chr126645117166451412664512901181.29/
chr2215030029215030306215030166626.796/
chr5583583455835893958358540450.261/
chr1584515558454385845295430.808/
chr15779106677791090177910783422.817/
chr7415782934157854341578417418.736/
chr2330915803309204833091793411.906/
chr5541039554106445410518394.783/
chr5312429393124316531243051361.525/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr126645117166451412664512905407.13
chr23309158133092048330917931157.31
chr11689000496890026968900187991.144
chr15779106677791090177910783966.755
chr5583583465835863858358540590.06
chr2215030029215030306215030166440.009
chr11437030354370325143703141426.716
chr2147562820147563079147562955353.196
chr5541039554106205410518286.851
chr6160521555160521787160521672274.572
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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