DNA Damage Atlas

GSM4126207-Neuro2A_bioreplica_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR10298781


Source Project ID:   

GSE139011

Cell Type:   

Neuro2A


Organism:   

Mus musculus


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296974722974887229714836343.9/
chr73447225134472466344723574436.11/
chr71044280681044282941044281801633.88/
chr15981671649816744198167301874.615/
chr1517513945175181851751550836.902/
chr15397105539713793971216733.843/
chr11103132971103133218103133093678.204/
chr18591509315915129759151113654.553/
chr5773589027735911177359005603.29/
chr13958818959588219295882042594.352/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296977722973197229714847218.6
chr73447225434472465344723573486.09
chr15175146851751689517515502197.57
rDNA458623391891.7
chr71044280681044282931044281801643.24
chr81088380781088382891088382161189.45
chr64811636448116573481165041145.08
chr182061230220612520206123721139.18
chr63468523034685508346853681133.53
rDNA1291315345137221106.92
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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