DNA Damage Atlas

GSM4143499-iPSC_saC9_R1_Rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10359715


Source Project ID:   

GSE135064

Cell Type:   

iPSCs


Organism:   

Homo sapiens


Treatment:   

nuclease delivery: PEI; saCas9:RAG1.1


Genotype:   

WT


Targeted break:   

RAG1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr156813221568132808681323834762.71+
chr15504659255046793550467933010.97-
chrX6887011368870314688703132007.31-
chr11558610121558612141558612121997.38-
chr21273779712737999127379971997.38-
chr61529207015292274152922701977.79-
chr78727311687273322872733161958.59-
chr89931707999317492993172791953.85-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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