DNA Damage Atlas

GSM4143501-iPSC_saC9_R1_spC9_AAVS1_Rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10359717


Source Project ID:   

GSE135064

Cell Type:   

iPSCs


Organism:   

Homo sapiens


Treatment:   

nuclease delivery: PEI; saCas9:RAG1.1; spCas9:AAVS1


Genotype:   

WT


Targeted break:   

RAG1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr636764351367657143676548018774.4-
chr1955626602556277675562711116797-
chr1310661257710661313910661292912499.3-
chr177389154173891751738915419557.26+
chr191617479216175458161749929040.65-
chr121074860791074864791074862796271.95-
chr116111105361111471611112516001.87+
chr113643659136436793364367914967.88-
chr12438244562438246672438244564755.98+
chr115254052525442952542293992.75+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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