DNA Damage Atlas

GSM4144340-5FdUR_UGI_HCT116_rep1_IP

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR10365987


Source Project ID:   

GSE126822

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

5-FUdR


Treatment Time:   

48hrs


Treatment Dose:   

20uM


Genotype:   

transgene: UGI


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

U-DNA-seq


Others:   

control: GSM4144341-5FdUR_UGI_HCT116_rep1_son.hg19


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA41199264412.3688/
chr7_gl000195_random032726263.24772/
chr7_gl000195_random98645104478999802.57073/
chr7_gl000195_random1420411432931430672.35526/
chr91170898181170919491170909052.25501/
chr17_gl000205_random1931620974203562.22644/
chr91170860531170875901170871352.21697/
chrUn_gl0002202906334420304102.15492/
chr12349104202349193652349148062.05974/
chr89995906799962824999598782.04068/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr7_gl000195_random331876263.33062/
chr91170898181170912651170909052.52091/
chr104815597448156701481561542.31348/
chr81437219131437228101437224642.28899/
chr81439211901439223951439222332.23866/
chr91170860571170875901170871352.22275/
chr104713619247138298471379062.21955/
chr175578483055786182557849942.21336/
chr81287501281287515941287511102.16789/
chr101261581891261593841261586572.06547/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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