DNA Damage Atlas

GSM4144342-5FdUR_UGI_HCT116_rep2_IP

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR10365989


Source Project ID:   

GSE126822

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

5-FUdR


Treatment Time:   

48hrs


Treatment Dose:   

20uM


Genotype:   

transgene: UGI


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

U-DNA-seq


Others:   

control: GSM4144343-5FdUR_UGI_HCT116_rep2_son.hg19


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA38309389533848016.6198/
chr7_gl000195_random2826936191331162.96782/
chrUn_gl0002209522097433958902.95451/
chr91170860571170876061170869582.94891/
chr91170897261170912651170900942.73529/
chrUn_gl0002204599850976152.70302/
chr7_gl000195_random9047695841910122.69616/
chr4_gl000193_random8859289350888192.65862/
chr7_gl000195_random7788182479802622.49336/
chr7_gl000195_random331876672.41215/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr91170860571170875901170869582.97969/
chr91170898181170912651170900942.90919/
chr111879725187992218799122.84156/
chr81434756501434761681434756912.63684/
chr22398919722398922612398920292.47934/
chr7_gl000195_random331876672.41215/
chr81435647831435665581435660202.34638/
chr51088290108867710883232.31437/
chr102254115322541628225412892.30986/
chr12009731002009735712009733942.28194/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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