DNA Damage Atlas

GSM4144344-RTX_UGI_HCT116_rep1_IP

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10365991


Source Project ID:   

GSE126822

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

Raltitrexed


Treatment Time:   

48hrs


Treatment Dose:   

100nM


Genotype:   

transgene: UGI


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

U-DNA-seq


Others:   

control: GSM4144345-RTX_UGI_HCT116_rep1_son.hg19


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr213408511934086329340856712.12394/
chrUn_gl0002203571842980389562.00879/
chr7_gl000195_random3438136281.98638/
chr12349158002349193692349167671.94267/
chr17_gl000205_random6013700766191.93446/
chr29673274996733479967329361.92488/
chr176278782862788443627881631.92406/
chr101026425491026444581026439021.90798/
chr31117612361117622711117615631.89356/
chr161504939015052461150519791.89044/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr213408531534086210340856712.66489/
chr211058370310584204105839182.43568/
chr101121023711121040451121038442.3415/
chr174535318645353804453536792.30365/
chr177367216173672640736722032.27735/
chr101213465811213469361213468752.18743/
chr154042150840421730404215312.16538/
chr81421147311421150661421150112.15245/
chr175812508258125937581258882.14083/
chr177999655979997131799970962.0687/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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