DNA Damage Atlas

GSM4144346-RTX_UGI_HCT116_rep2_IP

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10365993


Source Project ID:   

GSE126822

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

Raltitrexed


Treatment Time:   

48hrs


Treatment Dose:   

100nM


Genotype:   

transgene: UGI


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

U-DNA-seq


Others:   

control: GSM4144347-RTX_UGI_HCT116_rep2_son.hg19


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr81449399141449411551449405842.81597/
chr162254273122544040225438052.66968/
chr161503412815034473150342992.59726/
chr7_gl000195_random9043493272920122.54956/
chr211058370310584262105838962.48459/
chr91170877811170885251170879672.46897/
chr7_gl000195_random1010011033111017122.41469/
chr213408531534086210340857432.30271/
chr12349138582349157382349152372.26397/
chr168149265981493669814930312.24014/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr211058370310584204105838962.77223/
chr101028538031028544461028539102.5084/
chr177941539779416168794156032.41156/
chr168149271681493658814930312.37807/
chr29969669997016399700712.35804/
chr177367216173672640736725252.33835/
chr174891062748911272489107752.32696/
chr11801435051801438821801438102.31738/
chr101035368691035375391035373282.30701/
chr213408531534086210340857432.30271/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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