DNA Damage Atlas

GSM4144348-NT_UGI_HCT116_rep1_IP

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10365995


Source Project ID:   

GSE126822

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

transgene: UGI


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

U-DNA-seq


Others:   

control: GSM4144349-NT_UGI_HCT116_rep1_son.hg19


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA4014141330407606.89705/
chrUn_gl0002201445771457021451915.75659/
chr211058334010584157105839115.34705/
chr187298963372990018729898243.68275/
chr127752291477523332775231023.57536/
chr81285485491285493351285489293.24213/
chr176685780166858623668580813.12345/
chr114604881246049499460493023.06787/
chr81228378901228384811228381803.04749/
chrUn_gl0002392721827766274623.0069/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr211058346110584157105839116.19405/
chrUn_gl0002201445931457021451915.83964/
chr62300507623005525230052304.26732/
chr127752291477523293775231023.94327/
chrUn_gl0002392722727657274623.83205/
chr187298963372990018729898243.68275/
chr81263788781263794881263791113.51795/
chr213408516434086438340856553.38388/
chr176685780166858547668580813.33892/
chr81285485491285493351285489293.24213/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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