DNA Damage Atlas

GSM4144350-NT_UGI_HCT116_rep2_IP

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10365997


Source Project ID:   

GSE126822

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

transgene: UGI


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

U-DNA-seq


Others:   

control: GSM4144351-NT_UGI_HCT116_rep2_son.hg19


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28052287962855139.3574/
chrUn_gl0002201445931457351451679.48128/
chr211058346110584218105839454.41234/
chr63401167534012953340125634.35595/
chr177169190371693572716926934.03592/
chr22233410952233427382233420774.01508/
chr195406203254063012540624773.97636/
chr163197107931972310319716313.93436/
chr222802711828028192280279363.91342/
chr82009463220095915200953803.73151/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201445931457021451679.76341/
chr82009491420095640200953806.01931/
chr163197126731972089319716315.75653/
chr222802748128028192280279365.67651/
chr195406224254062965540624775.31281/
chr211058346110584157105839454.79905/
chr22233411762233425022233420774.78602/
chr63401167534012853340125634.72572/
chr167328123373282121732817174.54505/
chr76691722466918214669174644.4985/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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