DNA Damage Atlas

GSM4144352-WT_HCT116_rep1_IP

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10365999


Source Project ID:   

GSE126822

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

transgene: no transgene


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

U-DNA-seq


Others:   

control: GSM4144353-WT_HCT116_rep1_son.hg19


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002392720627700274353.65914/
chr211058337210584208105839083.14036/
chr11495928201495932691495930702.97147/
chr7_gl000195_random9603697877974872.86377/
chr7_gl000195_random7038774762723572.70035/
chr213408500934086534340856292.68108/
chr71440233551440238111440236182.45394/
chr177533085875331914753312512.28234/
chr168242834382429146824288722.27787/
chr171671875316719450167191772.2538/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002392721027695274353.72704/
chr211058337210584154105839083.35722/
chr7_gl000195_random7160074762723573.13056/
chr171671887416719381167191773.05598/
chr121318784451318788381318786543.01159/
chr7_gl000195_random9603697877974872.86377/
chr213408500934086502340856292.72413/
chr17651062776511420765110712.6051/
chr168242843882429146824288722.49234/
chr71440233561440238081440236182.47566/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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