DNA Damage Atlas

GSM4144354-WT_HCT116_rep2_IP

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10366001


Source Project ID:   

GSE126822

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

transgene: no transgene


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

U-DNA-seq


Others:   

control: GSM4144355-WT_HCT116_rep2_son.hg19


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA4005641330407547.59197/
chrUn_gl0002201445781457261451955.91772/
chr211058335610584154105839133.97833/
chr171671887416719381167191853.69865/
chr121318784431318788381318786393.08163/
chr101039109391039116261039112152.82535/
chr213408496434086502340855252.71659/
chr177533073175331927753312222.62693/
chr7_gl000195_random7160074776723502.62587/
chr162253478022535629225353832.55748/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr211058337210584154105839134.01766/
chr171671887416719381167191853.69865/
chr121318784451318788381318786393.09732/
chr177533085875331914753312222.85058/
chr101039109391039116261039112152.82535/
chr213408500934086502340855252.79847/
chr101149536561149544921149540092.73498/
chr114604886746049602460492792.73035/
chr7_gl000195_random7160074762723502.6323/
chr146613542166135774661355642.60951/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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