DNA Damage Atlas

GSM4144356-WT_K562_rep1_IP

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10366003


Source Project ID:   

GSE126822

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

transgene: no transgene


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

U-DNA-seq


Others:   

control: GSM4144357-WT_K562_rep1_son.hg19


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr222308268023083310230830178.44621/
chr139088983590890668908903825.65083/
chr211058359310584214105839235.10822/
chr139297485292976883929754664.58491/
chr139047670390478018904774374.47447/
chr139164381391644725916441894.20761/
chr17_gl000205_random8139384565819564.16156/
chr222256626822567750225668804.07383/
chrUn_gl0002204416046343458014.05473/
chr31977312591977316161977314364.01291/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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