DNA Damage Atlas


GSM4160242-ETO




Basic Information

Manual

Sample ID:   

SRR10446246


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2hrs


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

15.1266


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM4160241-NT


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.027127



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389970511241106786607.42-
chr1633820211338218113382092777.0569+
chr214717696314717939414717793257.9332+
chr743377860433790254337846540.9352-
chr768301805683038506830282640.8686+
chr1581077177810782938107768638.3974+
chr1954872355488320548806336.9464-
chr414095740314095857314095809936.4434-
chr1727534315275357452753484934.4275+
chr413541138213541244313541190432.5708+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389994511133106789408.69-
chr1633820219338217883382092771.7154+
chr214717696314717939414717793252.4976+
chr1581077177810782098107768646.447+
chrX11628716611628737411628716946.4445+
chr414095740314095849314095809942.3302-
chr768301805683036356830282642.0701+
chr975522680755226927552269141.5132+
chr743377860433790254337846539.7839-
chr1727534315275357452753484939.3122+
Download the Full Merged Peak List



Motif Analysis

Manual





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