DNA Damage Atlas


GSM4160243-ETO_WO




Basic Information

Manual

Sample ID:   

SRR10446247


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2hrs, washout 0 hr


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

43.1576


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM4160241-NT


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.018694



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147176553147179257147177932126.841+
chr1633819798338217123382092797.1264+
chr716890940168926101689193430.547-
chr768301848683038666830282627.9517+
chr611304616211304856511304765726.4413-
chr971842167186160718512324.9226+
chr413541126713541257213541189424.299-
chr1440947494409483504094787923.9964-
chr1311149019711149179011149136623.31+
chrX14464509914464614714464565022.1591-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr2147176879147179146147177932136.98+
chr16338200513382159933820927103.873+
chr413541126713541227813541189432.8044-
chr611304678411304856511304765732.6523-
chr716891115168926101689193430.6865-
chr1727534006275355792753484930.5659+
chr412892456412892555312892508726.2954+
chr415549138015549138615549138125.7311+
chr1440947494409482154094787925.3075-
chr971842957186160718512325.2572+
Download the Full Merged Peak List



Motif Analysis

Manual





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