DNA Damage Atlas


GSM4160244-ETO_WO_2h




Basic Information

Manual

Sample ID:   

SRR10446248


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2hrs, washout 2 hr


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

48.9652


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM4160241-NT


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.015857



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr214717638114717950314717793274.0897+
chr673519902735201747352011449.0029-
chr1633819784338221583382092737.516+
chr413541155913541246813541189818.7688+
chr1727533778275358312753483817.815-
chr971840157185937718512315.9779+
chr768301929683043496830282015.631-
chr611304624211304904711304765715.3863-
chr697147329971495459714850614.0987+
chr1312518713125221751252050412.836-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr214717659214717950314717793262.4628+
chr1633819784338220223382092730.0817+
chr1727534282275357362753483817.8851-
chr768301956683037216830282015.4495-
chr413541155913541239313541189815.3783+
chr697147885971492949714850615.0591+
chr971842957185937718512314.1712+
chr611304652511304873911304765713.9363-
chr1312519442125215471252050413.7744-
chr716891390168926111689195413.379+
Download the Full Merged Peak List



Motif Analysis

Manual





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