DNA Damage Atlas


GSM4160246-ETO--BTZ




Basic Information

Manual

Sample ID:   

SRR10446250


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide + Bortezomib


Treatment Time:   

2hrs


Treatment Dose:   

50uM Etoposide + 5uM Bortezomib


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

17.6697


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM4160245-BTZ


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.020975



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389994511345106787393.26-
chr16338201513382142033820927113.076+
chr743378020433786724337846585.7341-
chr768301860683036776830282672.7496+
chr214717718014717949514717792849.5283+
chr414095759714095865114095809943.1258-
chr610087554110087669410087614339.1865-
chr1727534325275355662753484936.3712+
chrX11628716611628737611628716933.9487+
chr914341772143430421434251832.8948+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389994511176106788301.1-
chr4155603931155603932155603931323.161+
chr6108720451108720452108720451262.992+
chr16338203903382142033820927118.743+
chr743378020433786724337846582.5296-
chr768301965683036776830282675.4651+
chr214015965214015965814015965266.0952+
chrX10441245710441246510441246058.7477-
chr214717718014717923914717792858.2704+
chr1727534325275355662753484950.4641+
Download the Full Merged Peak List



Motif Analysis

Manual





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