DNA Damage Atlas


GSM4160247-ETO--BTZ_WO




Basic Information

Manual

Sample ID:   

SRR10446251


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide + Bortezomib


Treatment Time:   

2hrs, washout 0 hr


Treatment Dose:   

50uM Etoposide + 5uM Bortezomib


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

50.1893


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM4160245-BTZ


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.018717



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389995011117106782887.68-
chr16338198633382140133820924119.416+
chr214717752514717913014717792697.2571-
chr812050657612050718312050678476.9437+
chr768301680683036316830282644.3622+
chr1954875365488265548806338.9041-
chr1155086890550874455508724136.5582-
chr412892487312892534712892508734.5944+
chr1110335884510335974110335930733.6113-
chr511555623811555673011555647632.9397+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr2147177525147178506147177926129.049-
chr16338202863382140133820924119.106+
chr812050657612050716712050678459.7044+
chr768302265683034126830282650.4487+
chr443025937430259524302593733.5153+
chr1954875985488265548806328.9676-
chrX15976983615977025815977004325.2585+
chr543841189438417274384139524.7756+
chr1155086890550874455508724124.3995-
chr412892487312892534712892508723.7208+
Download the Full Merged Peak List



Motif Analysis

Manual





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