DNA Damage Atlas


GSM4160248-ETO--BTZ_WO_2h




Basic Information

Manual

Sample ID:   

SRR10446252


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide + Bortezomib


Treatment Time:   

2hrs, washout 2 hr


Treatment Dose:   

50uM Etoposide + 5uM Bortezomib


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

72.6895


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM4160245-BTZ


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.011459



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr514666635214666674414666670038.9169-
chr514761129914761158614761154033.4217-
chrX76598455765999817659908917.3526-
chr1293576554935772519357706817.0193-
chr670175872701767777017638613.7279-
chrX82392484823933328239285712.9659+
chr669614906696158306961522912.8106-
chr669525108695261606952545512.8039-
chr670151804701526787015231912.084+
chr669209599692106796921009312.0231-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr673645767736457707364576792.0298+
chr514666648214666674414666670078.9876-
chr514761131014761158614761154050.4047-
chr871432790714331717143317049.8184-
chr810125040410125041410125041445.3156-
chr1293576852935772519357706831.1878-
chr622609146226091552260914627.3851+
chr324836408248364182483641825.7711-
chr571775579717755967177557924.3165+
chr1210168184610168186610168186423.2955-
Download the Full Merged Peak List



Motif Analysis

Manual





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