DNA Damage Atlas


GSM4160249-ETO_Exo7--ExoT




Basic Information

Manual

Sample ID:   

SRR10446253


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2hrs


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

28.2897


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.005417



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr5146666453146666983146666701668.78-
chrUn_GL456396116001244612018491.509-
chrUn_GL456389102261135410678488.467-
chr5147611298147611633147611541364.973-
chr16308292043082993630829607237.495-
chrX143482878143483237143483032167.79+
chr2225886472259053322589758122.677-
chr8714327557143350471433165107.23-
chr12935768569357756493577146104.252-
chr1633820170338222893382092797.5603+
Download the Full Peak List



Motif Analysis

Manual





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