DNA Damage Atlas


GSM4160250-ETO_ExoT




Basic Information

Manual

Sample ID:   

SRR10446254


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2hrs


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

103.056


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001817



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1293576844935773709357714011670.8-
chr31289365191289368971289367886858.73-
chr51466664281466670021466667005028.44-
chr87143295271433399714331703484.19-
chr163082938830829781308296063351.13-
chr51476112921476118691476115402512.55-
chrUn_GL4563961181512176120181925.52-
chr102997082029971044299710321279.84-
chr4254722732547249525472283993.998+
chr9903021729030253090302390975-
Download the Full Peak List



Motif Analysis

Manual





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