DNA Damage Atlas


GSM4160252-ETO_WO_ExoT




Basic Information

Manual

Sample ID:   

SRR10446256


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2hrs, washout 0 hr


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

101.503


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001347



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1293576844935773589357714012842.6-
chr31289365641289369211289367887697.16-
chr87143271171433181714331703555.02-
chr51476112421476117521476115403023.72-
chr51466660841466674961466667002162.96-
chr147406569674066018740659931863.89-
chr163082910530829963308296061658.38-
chr11007387351007389641007389531412.23-
chr102997081429971041299710321362.39-
chr65623350656233749562337301247.42-
Download the Full Peak List



Motif Analysis

Manual





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