DNA Damage Atlas


GSM4160253-ETO--BTZ_Exo7--ExoT




Basic Information

Manual

Sample ID:   

SRR10446257


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide + Bortezomib


Treatment Time:   

2hrs


Treatment Dose:   

50uM Etoposide + 5uM Bortezomib


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

31.9624


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.006148



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456396116001247212018377.463-
chrUn_GL45638997351135410678359.34-
chr16338203453382155833820927202.482+
chr5146666483146667270146666707188.794-
chr3128936577128936808128936789174.629-
chrX143482877143483239143483032154.873+
chr16308292273082962430829607149.321-
chr19548729154882925488063108.625-
chrX116287166116287374116287169103.735+
chr1753152550531527715315256989.7495+
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab