DNA Damage Atlas


GSM4160254-ETO--BTZ_ExoT




Basic Information

Manual

Sample ID:   

SRR10446258


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide + Bortezomib


Treatment Time:   

2hrs


Treatment Dose:   

50uM Etoposide + 5uM Bortezomib


Genotype:   

WT


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

196.974


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.00182



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr514666612314666696814666670013845.3-
chr1630829388308297453082960612491.6-
chr129357682093577359935771409906.07-
chr87143278771433176714331708605.75-
chr51476112981476119691476115406269.82-
chr11932276731932279291932278853639.76-
chr111104221221104224661104223342542.7-
chr175315241253153082531525642140.5+
chr147406576974066125740659932138.3-
chrUn_GL4563961181512341120182132.37-
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab