DNA Damage Atlas


GSM4160256-ETO--BTZ_WO_ExoT




Basic Information

Manual

Sample ID:   

SRR10446260


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide + Bortezomib


Treatment Time:   

2hrs, washout 0 hr


Treatment Dose:   

50uM Etoposide + 5uM Bortezomib


Genotype:   

WT


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

172.778


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001245



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr514666645814666671214666670042787.8-
chr871432952714331767143317014110.2-
chr1630829239308296483082960610281.4-
chr129357682693577352935771469541.22-
chr51476110411476117101476115405831.81-
chr31289365701289368061289367883744.62-
chr11932276681932279291932278853386.47-
chr102997082029971169299710322419.69-
chrUn_GL4563961181512193120182410.33-
chr111104221161104224741104223342316.1-
Download the Full Peak List



Motif Analysis

Manual





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