DNA Damage Atlas


GSM4160257-pre-BTZ--ETO




Basic Information

Manual

Sample ID:   

SRR10446261


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

pre-Bortezomib + Etoposide


Treatment Time:   

Bortezomib was 1 hr prior to an additional 2 hrs co-treatment with  ETO


Treatment Dose:   

50uM Etoposide + 5uM Bortezomib


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

31.7215


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.007824



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389994311205106781270.88-
chrUn_GL456396116001244612055490.866-
chr7683020176830363568302826107.56+
chr214717697014717981214717792894.9813+
chrX14348287714348350714348303286.2237+
chr458984687589857605898525084.5404-
chr743378184433790524337846580.7055-
chr1954874305488511548806379.7067-
chr1633820347338215593382092775.8768+
chrX11628704011628737411628716969.2316+
Download the Full Peak List



Motif Analysis

Manual





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