DNA Damage Atlas


GSM4160258-pre-BTZ--ETO_WO_2h




Basic Information

Manual

Sample ID:   

SRR10446262


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

pre-Bortezomib + Etoposide


Treatment Time:   

Bortezomib was 1 hr prior to an additional 2 hrs co-treatment with  ETO, washout 2 hrs


Treatment Dose:   

50uM Etoposide + 5uM Bortezomib


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

160.911


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.004106



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512196120181272.18-
chrUn_GL456389102281095710678679.555-
chr2167444215167444415167444415364.678-
chr12970611479706191797061676241.475+
chr2225870282259052722589758212.105-
chrX143482875143483624143483032170.64+
chr6988978898901789889964118.822+
chr3128936577128937076128936789116.563-
chr514666613114666689514666670184.7218-
chr641554709415552484155498471.35+
Download the Full Peak List



Motif Analysis

Manual





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