DNA Damage Atlas


GSM4160259-co-BTZ--ETO




Basic Information

Manual

Sample ID:   

SRR10446263


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide co-treatment with Bortezomib


Treatment Time:   

2hrs


Treatment Dose:   

50uM Etoposide + 5uM Bortezomib


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

20.1921


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.010065



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389990911345106782318.93-
chrUn_GL456396115411257712055350.777-
chrX143482877143483239143483102207.104-
chr1633820355338215593382092792.4435+
chr214717698414717939114717792883.1772+
chr768302011683038466830282675.953+
chr222588658225905352258975874.4889-
chr1954872695489069548806367.0833-
chr1297061302970619229706144365.3395+
chrX11628707611628737411628716964.2072+
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab