DNA Damage Atlas


GSM4160260-co-BTZ--ETO_WO_2h




Basic Information

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Sample ID:   

SRR10446264


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide co-treatment with Bortezomib


Treatment Time:   

washout 2 hrs


Treatment Dose:   

50uM Etoposide + 5uM Bortezomib


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

121.268


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.008375



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512192120181564.29-
chrUn_GL456389102061095510678668.473-
chrX143482708143483243143483032276.14+
chr12970613029706191797061443255.432+
chr2167444198167444674167444415222.958-
chr2225865982259051422589758170.214-
chr3967158149671625096716049169.73+
chr514666648314666670814666670199.7629-
chr1117615081176152811761508162.5813+
chr1158284312582845125828431251.7171+
Download the Full Peak List



Motif Analysis

Manual





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