DNA Damage Atlas


GSM4160261-post-BTZ--ETO_WO_2h




Basic Information

Manual

Sample ID:   

SRR10446265


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide post-treatment with Bortezomib


Treatment Time:   

2 hrs with ETO + post treatment with BTZ was for 2 hrs, washout 2 hrs


Treatment Dose:   

50uM Etoposide + 5uM Bortezomib


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

72.8142


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.009224



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512183120181031.17-
chrUn_GL45638999631095610678310.377-
chrX143482875143483247143483032235.12+
chr2225874462259052622589758141.047-
chr12970613029706217297061443111.995+
chr214717633414717954314717793295.4811+
chr1633819987338221313382092057.5729+
chr871432952714331937143317136.6124-
chr698896409890280988996434.3055+
chr514761126014761163214761154131.002-
Download the Full Peak List



Motif Analysis

Manual





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