DNA Damage Atlas


GSM4160263-no_BTZ--ETO_WO_2h




Basic Information

Manual

Sample ID:   

SRR10446267


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2hrs, washout 2 hrs


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

77.213


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.009666



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456396118151225412018891.134-
chrUn_GL45638999581095510678321.652-
chrX143482877143483243143483032268.441+
chr2147176983147179401147177932134.688+
chr2225874382259052122589758134.589-
chr12970609469706191597061443102.965+
chr216744414016744453016744441568.9501-
chr865998547659989526599854855.5341+
chr1633819805338220873382092045.1488+
chr514666641114666698714666670841.957-
Download the Full Peak List



Motif Analysis

Manual





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